Comparison
COMPARISON
TABLE OF CONTENTS
Version 8.1-UNIX
Printed: April 22, 1996 15:51
Command line control is added to GCG's program Diverge.
EDiverge
EDiverge is a version of Diverge with command line control. Diverge measures the percent divergence of two protein coding sequences using the method of Perler and Efstratiadis.
EOverlap
EOverlap compares two sets of DNA sequences to each other in both orientations using a WordSearch style comparison. EOverlap is an extended version of GCG's Overlap for use in database nonredundancy checks, together with the FilterOverlap program.
BigEOverlap
BigEOverlap compares two sets of DNA sequences to each other in both orientations using a WordSearch style comparison. EOverlap is an extended version of GCG's Overlap for use in database nonredundancy checks, together with the FilterOverlap program. BigEOverlap has a very high limit on total sequnec length for genome scale sequence analysis, but it too large for general use on most systems.
FilterOverlap
FilterOverlap reads the output file from EOverlap and filters out only those overlaps which meet specified values when the alignments are built. Output from GCG's Overlap program may also be used, but only if generated from a self comparison of a single database.