Gbonly
GBONLY
FUNCTION
GbOnly creates a list of GenBank entries that have accession numbers not found in the latest release of the Embl database.
DESCRIPTION
GbOnly creates a list of GenBank entries that have accession numbers not found in the latest release of the Embl database.
In recent releases, the EMBL database has included all outstanding GenBank updates so that the GbOnly database has been empty.
AUTHOR
This program was written by Peter Rice (E-mail: pmr@sanger.ac.uk Post: Informatics Division, The Sanger Centre, Hinxton Hall, Cambridge, CB10 1RQ, UK).
All EGCG programs are supported by the EGCG Support Team, who can be contacted by E-mail (egcg@embnet.org).
OUTPUT
The output from GbOnly is a simple report of GenBank entries for use with the GCG program DataSet to build the GbOnly database.
..
BCT:BACCWLA
BCT:ECOAMSG
BCT:ECOFADBA
BCT:ECOGLTC
BCT:ECOGLTXD
BCT:ECOGLTXU
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ALGORITHM
GbOnly reads the GenBank accession number index, and compares this to the output from a run of AccessionNumbers on the Embl database. Any GenBank entries that have accession numbers not included in the Embl file are written to a file called GbOnly Dat, which is then used as input by the DataSet program.
A script gbonlybuild automates the procedure.
The GbOnly database is used at Embl as the remaining part of GenEmbl together with the main Embl database. In the past, it was used to identify GenBank accession numbers or entries that were to be imported into Embl. Now the GbOnly database is empty.
COMMAND-LINE SUMMARY
Complete command-line control is not available for this program.
Printed: April 22, 1996 15:53 (1162)