EGCG PROGRAMS

TABLE OF CONTENTS

Version 8.1-UNIX

Printed: April 22, 1996 15:56

FULL DESCRIPTIONS OF EGCG PROGRAMS

ACKNOWLEDGEMENTS SHORT DESCRIPTIONS Short Descriptions 1-3 EDITING NewFeatures Contents 2-3 NewFeatures 2-7 FRAGMENT ASSEMBLY GelStatus 3-3 GelPicture 3-7 GelFigure * (+) 3-11 GelAnalyze 3-15 MAPPING MapSelect 4-3 EFingerPrint * 4-13 COMPARISON EDiverge 5-3 EOverlap * 5-7 BigEOverlap * 5-13 FilterOverlap * 5-15 DATABASE SEARCHING NewFetch * 6-3 FastACheck 6-7 TWordSearch (+) 6-11 TSegments 6-25 EQuickSearch * 6-31 QuickMatch * (+) 6-43 EQuickIndex * 6-55 StsSearch * 6-59 RFindPatterns * 6-63 PatternPlot * (+) 6-73 MULTIPLE SEQUENCE ANALYSIS PrettyPlot * (+) 7-5 PrettyBox * (+) 7-15 PlotAlign (+) 7-23 PepAllWindow (+) 7-31 EPlotSimilarity (+) 7-37 PolyDot * (+) 7-45 TProfileSearch 7-53 TProfileSegments 7-61 TProfileGap 7-67 ProfilePlot * (+) 7-73 SortConsensus * 7-77 ELineUp * 7-81 MultAlign * 7-97 EClustalW * 7-107 ClusTree * (+) 7-121 ProfAlign * 7-131 EVOLUTIONARY ANALYSIS Homologies * 8-3 ToPhylip * 8-9 Phylip2Tree * (+) 8-13 PATTERN RECOGNITION Palindrome 9-3 EWindow 9-7 EStatPlot (+) 9-13 ECodonFrequency * 9-21 EConsensus * 9-27 ECorrespond * 9-31 ERepeat * 9-35 ETerminator * 9-41 NUCLEOTIDE ANALYSIS Melt * 10-5 MeltPlot * (+) 10-9 BasePairPlot * (+) 10-15 CpGPlot * (+) 10-25 CpGReport * 10-31 Chaos * (+) 10-33 CodFish * 10-37 WordCount * 10-41 WordUp * 10-45 Poland * (+) 10-51 GeneTrans * 10-63 GapFrame * 10-67 Prima * (+) 10-69 QuickTandem * 10-85 Tandem * 10-87 Inverted * 10-89 EComposition * 10-91 PROTEIN ANALYSIS PepCoil (+) 11-3 PepNet * (+) 11-9 PepWheel * (+) 11-15 PepWindow * (+) 11-21 PepStats 11-29 SigCleave 11-33 Antigenic 11-37 HelixTurnHelix 11-41 DoDayhoffStat * 11-45 PepCount * 11-49 EPeptideSort * 11-53 TRANSLATION ETranslate 12-3 AllTrans 12-9 EExtractPeptide 12-13 MyTrans 12-17 MANIPULATION EAssemble 13-3 ECompTable 13-7 EReverse 13-11 PepCorrupt 13-15 DISPLAY EPublish * 14-3 ELibGen * 14-11 RedToHtml * 14-15 SEQUENCE EXCHANGE ToText 15-3 ToGenBank 15-5 ToEmbl 15-7 ToPirAll 15-9 ToPrimer 15-11 ToRelate * 15-13 CReformat * 15-17 EFromFasta * 15-27 EFromStaden * 15-31 EToStaden * 15-35 EGetSeq * 15-39 FILE UTILITIES NoReturn 16-3 CppJL 16-5 CRtoLF 16-9 AddComment 16-11 ECrypt * 16-13 ECodeSearch * 16-17 ECLSort * 16-19 MISCELLANEOUS Test 17-3 CTest 17-5 KeyFind 17-7 DATABASE MAINTENANCE DbStats 18-3 GbOnly 18-5 PirOnly 18-7 CheckLen 18-9 CheckLenComp 18-11 KabatToGcg 18-13 SeqDbToGcg 18-15 ConvertEnz 18-17 Ig2Nbrf * 18-19 EMBLtoGCGSC * 18-21 WHAT'S NEW What's New in Version 8.1 EGCG 19-3 (+) generates graphics which require a graphics output device. * new or enhanced in the current EGCG version.