Biochemistry 201

Advanced Molecular Biology

Bioinformatics:

Structure from Sequence

Doug Brutlag

Literature References

• CGC Resources
  • PMGM SeqWeb Interface
  • Peptide Structure
  • Plot Structure
  • PepPlot (Chou Fasman)
  • Helical Wheel
  • Moment (Eisenberg)
• Internet Resources
  • HSSP Database
  • Protein Structure Prediction
  • Protein Secondary Structure Prediction Tools
  • Protein Secondary Structure Prediction Tools at EXPASY
  • PredictProtein- PHD
  • Sequence-Structure Annotated Alignments
  • Structural Classification of Proteins (SCOP)
• Methods using multiple alignments
  • Predators Frishman & Argos
  • PHD Home Page
  • ZPRED server Zveleil et al.,
• Methods using single sequences
  • SOPM Geourjon & Delage
  • nnPredict Cohen et al.
  • BMERC PSA Server
  • SSP (Nearest-neighbor) Solovyev and Salamov