Mechanisms of DNA
Replication
January 21, 2000
Review of DNA replication by Arthur
Kornberg
Kornberg
A, (1988). DNA replication.J Biol Chem 263(1):1-4.
Bramhill, D. and Kornberg, A. (1988). A
model for Initiation at Origins of DNA Replication. Cell 54 ,
915-918.
Useful Reference Books
Kornberg, A and Baker, T. (1992) DNA Replication, W. H. Freeman
and Company, New York, New York. 931 pp.
J. Julian Blow, Ed. (1996) Eukaryotic DNA Replication. in
Frontiers in Molecular Biology Series Eds B. D. Hames and D. M.
Glover, IRL Press, Oxford University Press, New York. 232 pps.
DePamphilis, M. (1996) DNA Replication in Eukaryotic Cells, Cold
Spring Harbor Laboratory Press, 1058 pps.
DePamphilis, M. (1999) Concepts in Eukaryotic DNA Replication,
Cold Spring Harbor Laboratory Press, 1058 pps.
Literature References
Prokaryotic
Replication
Asai,
T. and Kogoma, T. (1994). D-loops and R-loops: alternative mechanisms
for the initiation of chromosome replication in Escherichia coli. J
Bacteriol 176 (7), 1807-12.
Baker,
T. A. (1995). Replication arrest. Cell 80 (4), 521-4.
Beckman,
R. A. and Loeb, L. A. (1993). Multi-stage proofreading in DNA
replication. Q Rev Biophys 26 (3), 225-331.
Bierne,
H. and Michel, B. (1994). When replication forks stop. Mol Microbiol
13 (1), 17-23.
Bramhill,
D. and Kornberg, A. (1988). A model for Initiation at Origins of DNA
Replication. Cell 54 , 915-918.
Crooke,
E., Hwang, D. S., Skarstad, K., Thony, B. and Kornberg, A. (1991). E.
coli minichromosome replication: regulation of initiation at oriC.
Res Microbiol 142 (2-3), 127-30.
Donachie,
W. D. and Begg, K. (1990). Genes and the replication cycle of
Escherichia coli. Res Microbiol 141 (1), 64-75.
Echols,
H. and Goodman, M. F. (1991). Fidelity mechanisms in DNA replication.
Annu Rev Biochem 60 (477), 477-511.
Goodman,
M. F., Creighton, S., Bloom, L. B. and Petruska, J. (1993).
Biochemical basis of DNA replication fidelity. Crit Rev Biochem Mol
Biol 28 (2), 83-126.
Kelman,
Z. and O'Donnell, M. (1994). DNA replication: enzymology and
mechanisms. Curr Opin Genet Dev 4 (2), 185-95.
Kornberg,
A. (1988). DNA Replication. J. Biol. Chem. 263 (1), 1-4.
Kornberg,
A. (1991). Control of initiation of the Escherichia coli chromosome.
Cold Spring Harb Symp Quant Biol 56 , 275-8.
Kuriyan,
J. and O'Donnell, M. (1993). Sliding clamps of DNA polymerases. J Mol
Biol 234 (4), 915-25.
Losick,
Richard and Shapiro, Lucy (1998) DNA Replication: Bringing the
Mountain to Mohammed. Science 282, pp. 1430 - 1431.
McHenry,
C. S. (1991). DNA polymerase III holoenzyme. Components, structure,
and mechanism of a true replicative complex. J Biol Chem 266 (29),
19127-30.
O'Donnell,
M. (1992). Accessory protein function in the DNA polymerase III
holoenzyme from E. coli. Bioessays 14 (2), 105-11.
O'Donnell,
M. (1994). Beta sliding clamp dynamics within E. coli DNA polymerase
III holoenzyme. Ann N Y Acad Sci 726 , 144-53; discussion
153-5.
O'Donnell,
M., Kuriyan, J., Kong, X. P., Stukenberg, P. T. and Onrust, R.
(1992). The sliding clamp of DNA polymerase III holoenzyme encircles
DNA. Mol Biol Cell 3 (9), 953-7. http://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?uid=2667216&form=6&db=m&Dopt=b
Eukaryotic
Replication
Bambara
RA, Murante RS, Henricksen LA (1997). Enzymes and reactions at the
eukaryotic DNA replication fork.J Biol Chem
272(8):4647-50.
Blow,
J. (1989). Eukaryotic chromosome replication requires both alpha and
delta DNA polymerases. Trends Genet, 5(5), 134-6.
Blow,
J. J. (1988). Eukaryotic DNA replication reconstituted outside the
cell. . Bioessays, 8(5), 149-52.
Blow,
J. J. (1989). DNA replication and its control. Curr Opin Cell Biol,
1(2), 263-7.
Borowiec,
J. A., Dean, F. B., Bullock, P. A. and Hurwitz, J. (1990). Binding
and unwinding--how T antigen engages the SV40 origin of DNA
replication. Cell, 60(2), 181-4.
Burhans,
W. C. and Huberman, J. A. (1994). DNA replication origins in animal
cells: a question of context? Science 263 (5147), 639-40.
Challberg,
M. D. and Kelly, T. J. (1989). Animal virus DNA replication. Annu Rev
Biochem,58 ,671-717.
Diffley,
J. F. (1994). Eukaryotic DNA replication. Curr Opin Cell Biol 6 (3),
368-72.
Dimitrov,
S. and Wolffe, A. P. (1995). Chromatin and nuclear assembly:
experimental approaches towards the reconstitution of
transcriptionally active and silent states. Biochim Biophys Acta 1260
(1), 1-13.
Downey,
K. M., Tan, C. K. and So, A. G. (1990). DNA polymerase delta: a
second eukaryotic DNA replicase. Bioessays, 12(5), 231-6.
Huberman
JA (1998). DNA replication. Choosing a place to begin.Science
281(5379):929-30.
Hurwitz,
J., Dean, F. B., Kwong, A. D. and Lee, S.-H. (1990). The in vitro
Replication of DNA Containing the SV40 Origin. J. Biol. Chem.,
265(30), 18043-18046.
Heichman,
K. A. and Roberts, J. M. (1994). Rules to replicate by [see
comments]. Cell 79 (4), 557-62.
Lehman,
I. R. and Kanguni, L. S. (1989). DNA Polymerase a. J. Biol. Chem.,
264(12), 4265-4268.
Kelly,
T. J. (1988). SV40 DNA replication. J Biol Chem, 263(34),
17889-92.
Majumder,
S. and DePamphilis, M. L. (1994). Requirements for DNA transcription
and replication at the beginning of mouse development. J Cell Biochem
55 (1), 59-68.
Podust
VN, Tiwari N, Stephan S, Fanning E (1998). Replication factor C
disengages from proliferating cell nuclear antigen (PCNA) upon
sliding clamp formation, and PCNA itself tethers DNA polymerase delta
to DNA. J Biol Chem 273(48):31992-9 .
Rowley,
A., Dowell, S. J. and Diffley, J. F. (1994). Recent developments in
the initiation of chromosomal DNA replication: a complex picture
emerges. Biochim Biophys Acta 1217 (3), 239-56.
Stillman,
B. (1989). Initiation of eukaryotic DNA replication in vitro. Annu
Rev Cell Biol, 5, 197-245.
Stillman,
B. (1994). Initiation of chromosomal DNA replication in eukaryotes.
Lessons from lambda. J Biol Chem 269 (10), 7047-50.
Stillman,
B. (1994). Smart machines at the DNA replication fork. Cell 78 (5),
725-8.
Stillman
B.(1996) Cell cycle control of DNA replication.Science 1996 Dec
6;274(5293):1659-64.
Su,
T. T., Follette, P. J. and O'Farrell, P. H. (1995). Qualifying for
the license to replicate. Cell 81 (6), 825-8.
von
Hippel, P. H. (1995). A ring to bind eukaryotic DNA polymerase.
Structure 3 (1), 123-4.
Wang,
T. S., Wong, S. W. and Korn, D. (1989). Human DNA polymerase alpha:
predicted functional domains and relationships with viral DNA
polymerases. Faseb J, 3(1), 14-21.