Fragment Assembly

• FRAGMENT ASSEMBLY
• TABLE OF CONTENTS
  • GelStatus
  • GelPicture
  • GelFigure (+)
  • GelAnalyze

FRAGMENT ASSEMBLY

TABLE OF CONTENTS

Version 8.1-UNIX

Printed: April 22, 1996 15:51

The Fragment Assembly programs provide additional functions for the GCG Fragment Assembly system.

GelStatus

GelStatus reads a GCG Fragment Assembly database, and produces a summary report of the quality of each contig.

GelPicture

GelPicture reads a contig from the Fragment Assembly database and displays a diagram of the gel alignments and a printout of the aligned gel sequences and consensus. GelPicture has been modified to include the sequence direction in both sections of the output, and to mark with '=======' any consensus sequence that is correct (agrees with every fragment) and has been sequenced in both directions.

GelFigure (+)

GelFigure produces a graphical report of the status of a contig in a fragment assembly project.

GelAnalyze

GelAnalyze reads a GelStatus report from a shotgun project, and produces project statistics by the method of Lander and Waterman.